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Seminars in Nephrology
Volume 27, Issue 6
, Pages 637-651
, November 2007
Proteomics for Biomarker Discovery in Acute Kidney Injury
References
- Acute Kidney Injury Network: report of an initiative to improve outcomes in acute kidney injury. Crit Care. 2007;11:R31
- . Acute renal failure. Lancet. 2005;365:417–430
- Acute renal failure in critically ill patients: a multinational, multicenter study. JAMA. 2005;294:813–818
- . Epidemiology of acute renal failure: the tip of the iceberg. Clin J Am Soc Nephrol. 2006;1:6–7
- Epidemiology and outcomes of acute renal failure in hospitalized patients: a national survey. Clin J Am Soc Nephrol. 2006;1:43–51
- Incidence and mortality of acute renal failure in Medicare beneficiaries, 1992 to 2001. J Am Soc Nephrol. 2006;17:1135–1142
- Has mortality from acute renal failure decreased? (A systematic review of the literature). Am J Med. 2005;118:827–832
- Declining mortality in patients with acute renal failure, 1988 to 2002. J Am Soc Nephrol. 2006;17:1143–1150
- Effect of acute renal failure requiring renal replacement therapy on outcome in critically ill patients. Crit Care Med. 2002;30:2051–2058
- Renal failure in the ICU: comparison of the impact of acute renal failure and end-stage renal disease on ICU outcomes. Kidney Int. 2002;62:986–996
- Minimal changes of serum creatinine predict prognosis in patients after cardiothoracic surgery: a prospective cohort study. J Am Soc Nephrol. 2004;15:1597–1605
- Early changes in organ function predict eventual survival in severe sepsis. Crit Care Med. 2005;33:2194–2201
- Acute kidney injury, mortality, length of stay, and costs in hospitalized patients. J Am Soc Nephrol. 2005;16:3365–3370
- RIFLE criteria for acute kidney injury is associated with hospital mortality in critically ill patients: a cohort analysis. Crit Care. 2006;10:R73–R82
- . Update on mechanisms of ischemic acute kidney injury. J Am Soc Nephrol. 2006;17:1503–1520
- . Need to intervene in established acute renal failure. J Am Soc Nephrol. 2004;15:2756–2758
- . Discovery of protein biomarkers for renal diseases. J Am Soc Nephrol. 2004;15:1677–1689
- Early detection of acute renal failure by serum cystatin C. Kidney Int. 2004;66:1115–1122
- . Defining acute renal failure: physiological principles. Intensive Care Med. 2004;30:33–37
- Anaritide in acute tubule necrosis (Auriculin Anaritide Acute Renal Failure Study Group). N Engl J Med. 1997;336:828–834
- Multicenter clinical trial of recombinant human insulin-like growth factor 1 in patients with acute renal failure. Kidney Int. 1999;55:2423–2432
- Gene expression in early ischemic renal injury: clues towards pathogenesis, biomarker discovery, and novel therapeutics. Mol Genet Metab. 2003;80:365–376
- . Biologic markers for the early detection of acute kidney injury. Curr Op Crit Care. 2004;10:476–482
- Acute kidney injury biomarkers—needs, present status, and future promise. NephSAP. 2006;5:63–71
- Protein biomarkers associated with acute renal failure and chronic kidney disease. Eur J Clin Invest. 2006;36:753–763
- . Emerging biomarkers of acute kidney injury. Contrib Nephrol. 2007;156:203–212
- . Diagnosis of acute kidney injury: from classic parameters to new biomarkers. Contrib Nephrol. 2007;156:213–219
- Nguyen MT, Devarajan P. Biomarkers for the early detection of acute kidney injury. Pediatr Nephrol. Epub 2007 Mar 30, PMID:17394022.
- . Renal research report. J Am Soc Nephrol. 2005;16:1886–1893
- . The NIH roadmap. Science. 2003;302:63–65
- . Proteomics in nephrology: current status and future directions. Am J Nephrol. 2004;24:360–378
- . Proteomic analysis of renal diseases: unraveling the pathophysiology and biomarker discovery. Expert Rev Proteomics. 2005;2:349–366
- . Towards the application of proteomics in renal disease diagnosis. Clin Sci. 2005;109:421–430
- . Discovery of urinary biomarkers. Mol Cell Proteomics. 2006;5:1760–1771
- . Technology insight: renal proteomics—at the crossroads between promise and problems. Nat Clin Pract Nephrol. 2006;2:445–458
- . Proteomics and nephrotoxicity. Contrib Nephrol. 2004;141:104–123
- . Comparison of the specificity and sensitivity of traditional methods for assessment of nephrotoxicity in the rat with metabolomic and proteomic methodologies. J Appl Toxicol. 2005;25:277–295
- . Developing a tool for noninvasive monitoring of renal allografts. Expert Rev Proteomics. 2006;3:497–509
- . Metabolomics in monitoring kidney transplants. Curr Opin Nephrol Hypertens. 2006;15:637–642
- . Urinary proteomics and biomarker discovery for glomerular diseases. Contrib Nephrol. 2004;141:292–307
- . Receiver-operating characteristic (ROC) plots: a fundamental evaluation tool in clinical medicine. Clin Chem. 1993;39:561–577
- In: Pepe MS editors. The statistical evaluation of medical tests for classification and prediction. Cary, NC: Oxford University Press; 2003;
- Phases of biomarker development for early detection of cancer. J Natl Cancer Inst. 2001;93:1054–1061
- Early prediction of acute renal injury using urinary proteomics. Am J Nephrol. 2005;25:318–326
- Differential gene expression following early renal ischemia-reperfusion. Kidney Int. 2003;63:1714–1724
- Calcium-binding proteins annexin A2 and S100A6 are sensors of tubular injury and recovery in acute renal failure. Kidney Int. 2005;68:2694–2703
- Identification of thrombospondin 1 (TSP-1) as a novel mediator of cell injury in kidney ischemia. J Clin Invest. 2005;115:3451–3459
- Ischemic and nephrotoxic acute renal failure are distinguished by their broad transcriptomic responses. Physiol Genomics. 2006;25:375–386
- Kidney injury molecule-1 (KIM-1), a putative epithelial cell adhesion molecule containing a novel immunoglobulin domain, is up-regulated in renal cells after injury. J Biol Chem. 1998;273:4135–4142
- Early detection of cysteine rich protein 61 (CYR61, CCN1) in urine following renal ischemic reperfusion injury. Kidney Int. 2002;62:1601–1610
- Expression of SSAT, a novel biomarker of tubular cell damage, increases in kidney ischemia-reperfusion injury. Am J Physiol. 2003;284:F1046–F1055
- . Role of apoptosis in hypoxic/ischemic damage in the kidney. Semin Nephrol. 2003;6:512–521
- . Apoptotic pathways in ischemic acute renal failure. Kidney Int. 2004;66:500–505
- . Apoptosis in ischemic renal injury: roles of GTP depletion and p53. Kidney Int. 2004;66:506–509
- The death domain of kidney ankyrin interacts with Fas and promotes Fas-mediated cell death in renal epithelia. J Am Soc Nephrol. 2004;15:41–51
- Apoptosis in ischemia/reperfusion injury of human renal allografts. Transplantation. 1998;66:872–876
- Apoptosis of tubular epithelial cells in donor kidney biopsies predicts early renal allograft function. J Am Soc Nephrol. 1999;10:2006–2013
- Failure of Bcl-2 up-regulation in proximal tubular epithelial cells of donor kidney biopsy specimens is associated with apoptosis and delayed graft function. Lab Invest. 2002;82:941–948
- Molecular and immunohistochemical characterization of the onset and resolution of human renal allograft ischemia-reperfusion injury. Transplantation. 2002;74:916–923
- Activation of mitochondrial apoptotic pathways in human renal allografts following ischemia-reperfusion. Transplantation. 2003;76:50–54
- Genome-wide gene-expression patterns of donor kidney biopsies distinguish primary allograft function. Lab Invest. 2004;84:353–361
- Targeting apoptosis in acute tubular injury. Biochem Pharmacol. 2003;66:1589–1594
- Modulating apoptosis as a target for effective therapy. Mol Immunol. 2006;43:1065–1079
- . Caspases as drug targets in ischemic organ injury. Curr Drug Targets Immune Endocr Metabol Disord. 2005;5:269–287
- . Pharmacologic manipulation of cell death: clinical applications insight?. J Clin Invest. 2005;115:2610–2617
- . Mitochondria: pharmacological manipulation of cell death. J Clin Invest. 2005;115:2640–2647
- . Pharmacologic manipulation of Bcl-2 family members to control cell death. J Clin Invest. 2005;115:2648–2655
- . Caspases: pharmacological manipulation of cell death. J Clin Invest. 2005;115:2665–2672
- Caspase inhibition prevents the increase in caspase-3, -2, -8 and -9 activity and apoptosis in the cold ischemic mouse kidney. Am J Transplant. 2004;8:1246–1254
- Characterization of IDN-6556 (3-[2-(2-tert-butyl-phenylaminooxalyl)-amino]-propionylamino]-4-oxo-5-(2,3,5,6-tetrafluoro-phenoxy)-pentanoic acid): a liver-targeted caspase inhibitor. J Pharmacol Exp Ther. 2004;309:634–640
- Caspase inhibition improves ischemia-reperfusion injury after lung transplantation. Am J Transplant. 2005;5:292–299
- Identification of neutrophil gelatinase-associated lipocalin as a novel urinary biomarker for ischemic injury. J Am Soc Nephrol. 2003;4:2534–2543
- Neutrophil gelatinase-associated lipocalin (NGAL): a novel urinary biomarker for cisplatin nephrotoxicity. Am J Nephrol. 2004;24:307–315
- Endocytic delivery of lipocalin-siderophore-iron complex rescues the kidney from ischemia-reperfusion injury. J Clin Invest. 2005;115:610–621
- Neutrophil gelatinase-associated lipocalin-mediated iron traffic in kidney epithelia. Curr Opin Nephrol Hypertens. 2005;15:442–449
- Neutrophil gelatinase-associated lipocalin (NGAL) as a biomarker for acute renal injury following cardiac surgery. Lancet. 2005;365:1231–1238
- Urinary IL-18 is an early predictive biomarker of acute kidney injury after cardiac surgery. Kidney Int. 2006;70:199–203
- Association between increases in urinary neutrophil gelatinase-associated lipocalin and acute renal dysfunction after adult cardiac surgery. Anesthesiology. 2006;105:485–491
- Kidney NGAL is a novel early marker of acute injury following transplantation. Pediatr Nephrol. 2006;21:856–863
- Urine NGAL and IL-18 are predictive biomarkers for delayed graft function following kidney transplantation. Am J Transplant. 2006;6:1639–1645
- Urinary neutrophil gelatinase-associated lipocalin in D+HUS: a novel marker of renal injury. Pediatr Nephrol. 2005;21:989–994
- Neutrophil gelatinase-associated lipocalin and renal function after percutaneous coronary interventions. Am J Nephrol. 2006;26:287–292
- Neutrophil gelatinase-associated lipocalin (NGAL) correlations with cystatin C, serum creatinine and eGFR in patients with normal serum creatinine undergoing coronary angiography. Nephrol Dial Transplant. 2007;22:295–296
- NGAL is an early predictive biomarker of contrast-induced nephropathy in children. Pediatr Nephrol. 2007;Epub ahead of print, PMID: 17874137
- Urine neutrophil gelatinase-associated lipocalin is an early marker of acute kidney injury in critically ill children: a prospective cohort study. Crit Care. 2007;11:R84 Epub ahead of print, PMID: 17678545
- Serum NGAL as a marker of renal function in children with chronic kidney disease. Pediatr Nephrol. 2007;22:101–108
- . Lipocalins as biochemical markers of disease. Biochim Biophys Acta. 2000;482:298–307
- Kidney injury molecule-1 (KIM-1): a novel biomarker for human renal proximal tubule injury. Kidney Int. 2006;62:237–244
- Kidney injury molecule-1: a tissue and urinary biomarker for nephrotoxicant-induced renal injury. Am J Physiol. 2004;286:F552–F563
- Urinary kidney injury molecule-1: a sensitive quantitative biomarker for early detection of kidney tubular injury. Am J Physiol. 2006;290:F517–F529
- Urinary kidney injury molecule-1 level is an early and sensitive marker of acute kidney injury following cardiopulmonary bypass. [abstract] J Am Soc Nephrol. 2006;17:403A
- Urinary biomarkers for early detection of acute kidney injury. [abstract] J Am Soc Nephrol. 2006;17:403A
- Urinary N-Acetyl-β-(D)-glucosaminidase activity and kidney injury molecule-1 level are associated with adverse outcomes in acute renal failure. J Am Soc Nephrol. 2007;18:904–912
- Overexpression of SSAT in kidney cells recapitulates various phenotypic aspects of kidney ischemia-reperfusion injury. J Am Soc Nephrol. 2004;15:1844–1852
- Induction of Zf9 in the kidney following early ischemia/reperfusion. Kidney Int. 2005;68:1511–1519
- Hochegger K, Koppelstatter C, Tagwerker A, et al. p21 and mTERT are novel markers for determining different ischemic time periods in renal ischemia reperfusion injury. Am J Physiol Renal Physiol. 2007;292:F762-8.
- Induction of clusterin and chronic oxidative renal disease in the rat and its dissociation from cell injury. Lab Invest. 2004;71:209–218
- . Kidney ischemia-reperfusion regulates expression and distribution of tubulin subunits, β-actin and rho GTPases in proximal tubules. Arch Biochem Biophys. 2004;431:31–46
- . Cytoprotective effects of heme oxygenase in acute renal failure. Contrib Nephrol. 2005;148:70–85
- Induction of renal metallothionein in rats with ischemic renal failure. Res Commun Mol Pathol Pharmacol. 2001;110:147–160
- Up-regulation of Galectin-3 in acute renal failure of the rat. Am J Pathol. 2000;157:815–823
- Localization of the protein product of the immediate early growth response gene, Egr-1, in the kidney after ischemia and reperfusion. Cell Regul. 1991;2:251–260
- Expression of vascular cell adhesion molecule-1 in human renal allografts. J Am Soc Nephrol. 1992;3:1180–1185
- Localization of proliferating cell nuclear antigen, vimentin, c-Fos, and clusterin in the postischemic kidney (Evidence for a heterogeneous genetic response among nephron segments, and a large pool of mitotically active and dedifferentiated cells). J Clin Invest. 1994;93:2175–2188
- . Heat-shock protein 70: molecular supertool?. Ped Nephrol. 2005;20:707–713
- Maladaptive role of IL-6 in ischemic acute renal failure. J Am Soc Nephrol. 2005;16:3315–3325
- Relationship between expression of Bcl-2 genes and growth factors in ischemic acute renal failure in the rat. J Am Soc Nephrol. 2000;11:454–467
- . Leukemia inhibitory factor is involved in tubular regeneration after experimental acute renal failure. J Am Soc Nephrol. 2003;14:3090–3101
- Urinary measurement of Na+/H+ exchanger isoform 3 (NHE3) protein as new marker of tubule injury in critically ill patients with ARF. Am J Kidney Dis. 2003;42:497–506
- Human acute tubular necrosis: a lectin and immunohistochemical study. Hum Pathol. 1995;26:230–239
- . Diagnostic potential for urinary proteomics. Pharmacogenomics. 2007;8:237–255
- . Urinary proteomics. Clin Chim Acta. 2007;375:49–56
- Advances in urinary proteome analysis and biomarker discovery. J Am Soc Nephrol. 2007;18:1057–1071
- Characterization of renal allograft rejection by urinary proteomic analysis. Anal Surg. 2003;237:660–664
- Proteome-based detection of urine proteins associated with acute renal allograft rejection. J Am Soc Nephrol. 2004;15:219–227
- Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry. Kidney Int. 2004;65:323–332
- Early prediction of acute renal injury using urinary proteomics. Am J Nephrol. 2005;25:318–326
- Identification of proteins in slow continuous ultrafiltrate by reversed-phase chromatography and proteomics. J Proteome Res. 2004;3:1254–1260
- Exosomal fetuin-A identified by proteomics: a novel urinary biomarker for detecting acute kidney injury. Kidney Int. 2006;70:1847–1857
- . Identification and proteomic profiling of exosomes in human urine. Proc Natl Acad Sci U S A. 2004;101:13368–13373
- Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. Kidney Int. 2006;69:1471–1476
- Keratinocyte-derived chemokine is an early biomarker of ischemic acute kidney injury. Am J Physiol. 2006;290:F1187–F1193
- Biomarker and drug-target discovery using proteomics in a new rat model of sepsis-induced acute renal failure. Kidney Int. 2006;70:496–506
- . Acute renal failure and sepsis. N Engl J Med. 2004;351:159–169
- Impaired IL-18 processing protects caspase-1 deficient mice from ischemic acute renal failure. J Clin Invest. 2001;107:1145–1152
- . Urinary interleukin-18 is a marker of human acute tubular necrosis. Am J Kidney Dis. 2004;43:405–414
- Urine IL-18 is an early diagnostic marker for acute kidney injury and predicts mortality in the intensive care unit. J Am Soc Nephrol. 2005;16:3046–3052
- Prognostic value of tubular proteinuria and enzymuria in nonoliguric acute tubular necrosis. Clin Chem. 2004;50:552–558
- Serum NGAL and cystatin C as predictive biomarkers for acute kidney injury. [abstract] J Am Soc Nephrol. 2006;17:404A
Studies cited in this review that were performed in the author’s laboratory were supported by grants from the National Institutes of Health/National Institute for Diabetes and Digestive and Kidney Diseases (R01 DK53289 and R21 DK070163), a Grant-in-Aid from the American Heart Association Ohio Valley Affiliate, and a Translational Research Initiative Grant from the Cincinnati Children’s Hospital Medical Center.
PII: S0270-9295(07)00129-5
doi: 10.1016/j.semnephrol.2007.09.005
© 2007 Elsevier Inc. All rights reserved.
« Previous
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Seminars in Nephrology
Volume 27, Issue 6
, Pages 637-651
, November 2007
