Advertisement
Review Article| Volume 42, ISSUE 3, 151285, May 2022

Risk Classification and Subphenotyping of Acute Kidney Injury: Concepts and Methodologies

      Summary

      Acute kidney injury (AKI) is a complex syndrome with a paucity of therapeutic development. One aspect that could explain the lack of implementation science in the AKI field is the vast heterogeneity of the AKI syndrome, which hinders precise therapeutic applications for specific AKI subpopulations. In this context, there is a consensual focus of the scientific community toward the development and validation of tools to better subphenotype AKI and therefore facilitate precision medicine approaches. The subphenotyping of AKI requires the use of specific methodologies suitable for interrogation of multimodal data inputs from different sources such as electronic health records, organ support devices, and/or biospecimens and tissues. Over the past years, the surge of artificial intelligence applied to health care has yielded novel machine learning methodologies for data acquisition, harmonization, and interrogation that can assist with subphenotyping of AKI. However, one should recognize that although risk classification and subphenotyping of AKI is critically important, testing their potential applications is even more important to promote implementation science. For example, risk-classification should support actionable interventions that could ameliorate or prevent the occurrence of the outcome being predicted. Furthermore, subphenotyping could be applied to predict therapeutic responses to support enrichment and adaptive platforms for pragmatic clinical trials.

      Keywords

      To read this article in full you will need to make a payment

      Purchase one-time access:

      Academic & Personal: 24 hour online accessCorporate R&D Professionals: 24 hour online access
      One-time access price info
      • For academic or personal research use, select 'Academic and Personal'
      • For corporate R&D use, select 'Corporate R&D Professionals'

      Subscribe:

      Subscribe to Seminars in Nephrology
      Already a print subscriber? Claim online access
      Already an online subscriber? Sign in
      Institutional Access: Sign in to ScienceDirect

      REFERENCES

        • Susantitaphong P
        • Cruz DN
        • Cerda J
        • et al.
        World incidence of AKI: a meta-analysis.
        Clin J Am Soc Nephrol. 2013; 8: 1482-1493
        • Rewa O
        • Bagshaw SM.
        Acute kidney injury[mdash]epidemiology, outcomes and economics.
        Nat Rev Nephrol. 2014; 10: 193-207
        • Bouchard J
        • Acharya A
        • Cerda J
        • et al.
        A prospective international multicenter study of AKI in the intensive care unit.
        Clin J Am Soc Nephrol. 2015; 10: 1324-1331
        • Silver SA
        • Long J
        • Zheng Y
        • Chertow GM.
        Cost of acute kidney injury in hospitalized patients.
        J Hosp Med. 2017; 12: 70-76
        • Wu VC
        • Wu CH
        • Huang TM
        • et al.
        Long-term risk of coronary events after AKI.
        J Am Soc Nephrol. 2014; 25: 595-605
        • Wu VC
        • Wu PC
        • Wu CH
        • et al.
        The impact of acute kidney injury on the long-term risk of stroke.
        J Am Heart Assoc. 2014; 3e000933
        • Odutayo A
        • Wong CX
        • Farkouh M
        • et al.
        AKI and long-term risk for cardiovascular events and mortality.
        J Am Soc Nephrol. 2017; 28: 377-387
        • Chawla LS
        • Amdur RL
        • Amodeo S
        • Kimmel PL
        • Palant CE.
        The severity of acute kidney injury predicts progression to chronic kidney disease.
        Kidney Int. 2011; 79: 1361-1369
        • Heung M
        • Steffick DE
        • Zivin K
        • et al.
        Acute kidney injury recovery pattern and subsequent risk of CKD: an analysis of Veterans Health Administration Data.
        Am J Kidney Dis. 2016; 67: 742-752
        • Thakar CV
        • Christianson A
        • Himmelfarb J
        • Leonard AC.
        Acute kidney injury episodes and chronic kidney disease risk in diabetes mellitus.
        Clin J Am Soc Nephrol. 2011; 6: 2567-2572
        • Kidney Disease: Improving Global Outcomes (KDIGO) Acute Kidney Injury Work Group
        KDIGO clinical practice guideline for acute kidney injury.
        Kidney Int. 2012; 2: 1-138
        • Vaara ST
        • Forni LG
        • Joannidis M.
        Subphenotypes of acute kidney injury in adults.
        Curr Opin Crit Care. 2022; 28: 599-604
        • Vaara ST
        • Bhatraju PK
        • Stanski NL
        • et al.
        Subphenotypes in acute kidney injury: a narrative review.
        Crit Care. 2022; 26: 251
        • Soranno DE
        • Bihorac A
        • Goldstein SL
        • et al.
        Artificial intelligence for AKI!Now: let's not await Plato's utopian republic.
        Kidney360. 2022; 3: 376-381
        • Goldstein SL
        • Jaber BL
        • Faubel S
        • Chawla LS
        • Acute Kidney Injury Advisory Group of American Society of Nephrology
        AKI transition of care: a potential opportunity to detect and prevent CKD.
        Clin J Am Soc Nephrol. 2013; 8: 476-483
        • Chawla LS
        • Bellomo R
        • Bihorac A
        • et al.
        Acute kidney disease and renal recovery: consensus report of the Acute Disease Quality Initiative (ADQI) 16 Workgroup.
        Nat Rev Nephrol. 2017; 13: 241-257
        • Chawla LS
        • Eggers PW
        • Star RA
        • Kimmel PL.
        Acute kidney injury and chronic kidney disease as interconnected syndromes.
        N Engl J Med. 2014; 371: 58-66
        • Hsu CY
        • Chinchilli VM
        • Coca S
        • et al.
        Post-acute kidney injury proteinuria and subsequent kidney disease progression: the Assessment, Serial Evaluation, and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) atudy.
        JAMA Intern Med. 2020; 180: 402-410
        • Lei VJ
        • Luong T
        • Shan E
        • et al.
        Risk stratification for postoperative acute kidney injury in major noncardiac surgery using preoperative and intraoperative data.
        JAMA Netw Open. 2019; 2e1916921
        • Thakar CV
        • Arrigain S
        • Worley S
        • Yared JP
        • Paganini EP.
        A clinical score to predict acute renal failure after cardiac surgery.
        J Am Soc Nephrol. 2005; 16: 162-168
        • Demirjian S
        • Bashour CA
        • Shaw A
        • et al.
        Predictive accuracy of a perioperative laboratory test-based prediction model for moderate to severe acute kidney injury after cardiac surgery.
        JAMA. 2022; 327: 956-964
        • Churpek MM
        • Carey KA
        • Edelson DP
        • et al.
        Internal and external validation of a machine learning risk score for acute kidney injury.
        JAMA Netw Open. 2020; 3e2012892
        • Koyner JL
        • Carey KA
        • Edelson DP
        • Churpek MM.
        The development of a machine learning inpatient acute kidney injury prediction model.
        Crit Care Med. 2018; 46: 1070-1077
        • Flechet M
        • Falini S
        • Bonetti C
        • et al.
        Machine learning versus physicians' prediction of acute kidney injury in critically ill adults: a prospective evaluation of the AKIpredictor.
        Crit Care. 2019; 23: 282
        • Flechet M
        • Guiza F
        • Schetz M
        • et al.
        AKIpredictor, an online prognostic calculator for acute kidney injury in adult critically ill patients: development, validation and comparison to serum neutrophil gelatinase-associated lipocalin.
        Intensive Care Med. 2017; 43: 764-773
        • Simonov M
        • Ugwuowo U
        • Moreira E
        • et al.
        A simple real-time model for predicting acute kidney injury in hospitalized patients in the US: a descriptive modeling study.
        PLoS Med. 2019; 16e1002861
        • Chaudhary K
        • Vaid A
        • Duffy Á
        • et al.
        Utilization of deep learning for subphenotype identification in sepsis-associated acute kidney injury.
        Clin J Am Soc Nephrol. 2020; 15: 1557-1565
        • Grams ME
        • Sang Y
        • Coresh J
        • et al.
        Candidate surrogate end points for ESRD after AKI.
        J Am Soc Nephrol. 2016; 27: 2851-2859
        • Neyra JA
        • Ortiz-Soriano V
        • Liu LJ
        • et al.
        Prediction of mortality and major adverse kidney events in critically ill patients with acute kidney injury.
        Am J Kidney Dis. Published online July 19, 2022; https://doi.org/10.1053/j.ajkd.2022.06.004
        • James MT
        • Pannu N
        • Hemmelgarn BR
        • et al.
        Derivation and external validation of prediction models for advanced chronic kidney disease following acute kidney injury.
        JAMA. 2017; 318: 1787-1797
        • Sawhney S
        • Tan Z
        • Black C
        • et al.
        Validation of risk prediction models to inform clinical decisions after acute kidney injury.
        Am J Kidney Dis. 2021; 78: 28-37
        • Tangri N
        • Grams ME
        • Levey AS
        • et al.
        Multinational assessment of accuracy of equations for predicting risk of kidney failure: a meta-analysis.
        JAMA. 2016; 315: 164-174
        • Chan L
        • Nadkarni GN
        • Fleming F
        • et al.
        Derivation and validation of a machine learning risk score using biomarker and electronic patient data to predict progression of diabetic kidney disease.
        Diabetologia. 2021; 64: 1504-1515
        • Heerspink HJL
        • Stefánsson BV
        • Correa-Rotter R
        • et al.
        Dapagliflozin in patients with chronic kidney disease.
        N Engl J Med. 2020; 383: 1436-1446
        • Wanner C
        • Inzucchi SE
        • Lachin JM
        • et al.
        Empagliflozin and progression of kidney disease in type 2 diabetes.
        N Engl J Med. 2016; 375: 323-334
        • Bakris GL
        • Agarwal R
        • Anker SD
        • et al.
        Effect of finerenone on chronic kidney disease outcomes in type 2 diabetes.
        N Engl J Med. 2020; 383: 2219-2229
        • Wilson M
        • Packington R
        • Sewell H
        • et al.
        Biomarkers during recovery from AKI and prediction of long-term reductions in estimated GFR.
        Am J Kidney Dis. 2022; 79 (e641): 646-656
        • Bagshaw SM
        • Uchino S
        • Bellomo R
        • et al.
        Septic acute kidney injury in critically ill patients: clinical characteristics and outcomes.
        Clin J Am Soc Nephrol. 2007; 2: 431-439
        • Peerapornratana S
        • Manrique-Caballero CL
        • Gomez H
        • Kellum JA.
        Acute kidney injury from sepsis: current concepts, epidemiology, pathophysiology, prevention and treatment.
        Kidney Int. 2019; 96: 1083-1099
        • Gomez H
        • Ince C
        • De Backer D
        • et al.
        A unified theory of sepsis-induced acute kidney injury: inflammation, microcirculatory dysfunction, bioenergetics, and the tubular cell adaptation to injury.
        Shock. 2014; 41: 3-11
        • Seymour CW
        • Kennedy JN
        • Wang S
        • et al.
        Derivation, validation, and potential treatment implications of novel clinical phenotypes for sepsis.
        JAMA. 2019; 321: 2003-2017
        • Liu KD.
        Clinical trials for AKI: lessons learned from the ARDS network.
        Semin Nephrol. 2020; 40: 243-246
        • Weisbord SD
        • Palevsky PM.
        Design of clinical trials in acute kidney injury: lessons from the past and future directions.
        Semin Nephrol. 2016; 36: 42-52
        • Marshall JC.
        Why have clinical trials in sepsis failed?.
        Trends Mol Med. 2014; 20: 195-203
        • Perner A
        • Gordon AC
        • Angus DC
        • et al.
        The intensive care medicine research agenda on septic shock.
        Intensive Care Med. 2017; 43: 1294-1305
        • Basu RK
        • Hackbarth R
        • Gillespie S
        • et al.
        Clinical phenotypes of acute kidney injury are associated with unique outcomes in critically ill septic children.
        Pediatr Res. 2021; 90: 1031-1038
        • Chaudhary K
        • Vaid A
        • Duffy A
        • et al.
        Utilization of deep learning for subphenotype identification in sepsis-associated acute kidney injury.
        Clin J Am Soc Nephrol. 2020; 15: 1557-1565
        • Stanski NL
        • Stenson EK
        • Cvijanovich NZ
        • et al.
        PERSEVERE biomarkers predict severe acute kidney injury and renal recovery in pediatric septic shock.
        Am J Respir Crit Care Med. 2020; 201: 848-855
        • Iwashyna TJ
        • Burke JF
        • Sussman JB
        • Prescott HC
        • Hayward RA
        • Angus DC.
        Implications of heterogeneity of treatment effect for reporting and analysis of randomized trials in critical care.
        Am J Respir Crit Care Med. 2015; 192: 1045-1051
        • Maslove DM
        • Tang B
        • Shankar-Hari M
        • et al.
        Redefining critical illness.
        Nat Med. 2022; 28: 1141-1148
        • Fiorentino M
        • Xu Z
        • Smith A
        • et al.
        Serial measurement of cell-cycle arrest biomarkers [TIMP-2]. [IGFBP7] and risk for progression to death, dialysis, or severe acute kidney injury in patients with septic shock.
        Am J Respir Crit Care Med. 2020; 202: 1262-1270
        • Bhatraju PK
        • Zelnick LR
        • Herting J
        • et al.
        Identification of acute kidney injury subphenotypes with differing molecular signatures and responses to vasopressin therapy.
        Am J Respir Crit Care Med. 2019; 199: 863-872
        • Pickkers P
        • Mehta RL
        • Murray PT
        • et al.
        Effect of human recombinant alkaline phosphatase on 7-day creatinine clearance in patients with sepsis-associated acute kidney injury: a randomized clinical trial.
        JAMA. 2018; 320: 1998-2009
        • Vaara ST
        • Ostermann M
        • Bitker L
        • et al.
        Restrictive fluid management versus usual care in acute kidney injury (REVERSE-AKI): a pilot randomized controlled feasibility trial.
        Intensive Care Med. 2021; 47: 665-673
        • Barbar SD
        • Clere-Jehl R
        • Bourredjem A
        • et al.
        Timing of renal-replacement therapy in patients with acute kidney injury and sepsis.
        N Engl J Med. 2018; 379: 1431-1442
        • Garbero E
        • Livigni S
        • Ferrari F
        • et al.
        High dose coupled plasma filtration and adsorption in septic shock patients. Results of the COMPACT-2: a multicentre, adaptive, randomised clinical trial.
        Intensive Care Med. 2021; 47: 1303-1311
        • Calfee CS
        • Delucchi K
        • Parsons PE
        • et al.
        Subphenotypes in acute respiratory distress syndrome: latent class analysis of data from two randomised controlled trials.
        Lancet Respir Med. 2014; 2: 611-620
        • Bos LD
        • Schouten LR
        • van Vught LA
        • et al.
        Identification and validation of distinct biological phenotypes in patients with acute respiratory distress syndrome by cluster analysis.
        Thorax. 2017; 72: 876-883
        • Legrand M
        • Bagshaw SM
        • Koyner JL
        • et al.
        Optimizing the design and analysis of future AKI trials.
        J Am Soc Nephrol. 2022; 33: 1459-1470
        • Rose S.
        Machine learning for prediction in electronic health data.
        JAMA Netw Open. 2018; 1e181404
        • Solares JRA
        • Raimondi FED
        • Zhu Y
        • et al.
        Deep learning for electronic health records: a comparative review of multiple deep neural architectures.
        J Biomed Inform. 2020; 101103337
        • Yu K-H
        • Beam AL
        • Kohane IS.
        Artificial intelligence in healthcare.
        Nat Biomed Eng. 2018; 2: 719-731
        • Kim H-S
        • Kim D-J
        • Yoon K-H.
        Medical big data is not yet available: why we need realism rather than exaggeration.
        Endocrinol Metab. 2019; 34: 349-354
        • Yadav P
        • Steinbach M
        • Kumar V
        • Simon G.
        Mining electronic health records (EHRs). A survey.
        ACM Comput Surv. 2018; 50: 1-40
        • Singh A
        • Nadkarni G
        • Gottesman O
        • Ellis SB
        • Bottinger EP
        • Guttag JV.
        Incorporating temporal EHR data in predictive models for risk stratification of renal function deterioration.
        J Biomed Inform. 2015; 53: 220-228
        • Johnson AE
        • Mark RG.
        Real-time mortality prediction in the intensive care unit.
        in: Paper Presented at a Conference: AMIA Annual Symposium Proceedings. Washington, DC, November 6, 2017 - November 8, 2017
        • Shickel B
        • Tighe PJ
        • Bihorac A
        • Rashidi P.
        Deep EHR: a survey of recent advances in deep learning techniques for electronic health record (EHR) analysis.
        IEEE J Biomed Health Inform. 2017; 22: 1589-1604
        • Vaswani A
        • Shazeer N
        • Parmar N
        • et al.
        Attention is all you need.
        Adv Neural Inform Processing Syst. 2017; : 30
        • Graves A.
        Supervised sequence labelling with recurrent neural networks, Vol 385. Springer, 2012 (ISBN 978-3-642-24796-5)
        • Cho K
        • Van Merriënboer B
        • Bahdanau D
        • Bengio Y.
        On the properties of neural machine translation: encoder-decoder approaches.
        arXiv preprint. 2014; (arXiv:1409.1259)
        • Baytas IM
        • Xiao C
        • Zhang X
        • Wang F
        • Jain AK
        • Zhou J.
        Patient subtyping via time-aware LSTM networks+.
        in: Paper presented at a Conference: Proceedings of the 23rd ACM SIGKDD international conference on knowledge discovery and data mining. Halifax NS, Canada, August 13 - 17, 2017
        • Menez S
        • Moledina DG
        • Garg AX
        • et al.
        Results from the TRIBE-AKI study found associations between post-operative blood biomarkers and risk of chronic kidney disease after cardiac surgery.
        Kidney Int. 2021; 99: 716-724
        • Menez S
        • Ju W
        • Menon R
        • et al.
        Urinary EGF and MCP-1 and risk of CKD after cardiac surgery.
        JCI Insight. 2021; 6e147464
        • Mansour SG
        • Bhatraju PK
        • Coca SG
        • et al.
        Angiopoietins as prognostic markers for future kidney disease and heart failure events after acute kidney injury.
        J Am Soc Nephrol. 2022; 33: 613-627